Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3012PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_3496 Fe-S protein, radical SAM family. (429 aa)    
Predicted Functional Partners:
Acid_3021
KEGG: ade:Adeh_0877 hypothetical protein.
 
     0.945
Acid_3018
KEGG: ade:Adeh_0874 hypothetical protein.
 
     0.943
Acid_3020
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_0876 methyltransferase type 11.
 
    0.943
Acid_3014
KEGG: ade:Adeh_1065 hypothetical protein.
 
     0.941
Acid_3016
KEGG: ade:Adeh_1058 hypothetical protein.
 
     0.941
Acid_3015
KEGG: ade:Adeh_1059 hypothetical protein.
 
     0.940
Acid_3013
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_1064 glycosyl transferase, group 1.
 
     0.937
Acid_3010
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: ade:Adeh_1060 NAD-dependent epimerase/dehydratase.
 
     0.929
Acid_3019
PFAM: Nucleotidyl transferase; KEGG: ade:Adeh_0875 nucleotidyl transferase.
 
     0.912
Acid_3011
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: ret:RHE_PB00053 probable nucleoside diphosphate epimerase protein.
 
     0.906
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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