STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3044PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aba:Acid345_0329 transcriptional regulator, LacI family. (276 aa)    
Predicted Functional Partners:
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
    
 
 0.858
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.713
Acid_3043
KEGG: aba:Acid345_1066 hypothetical protein.
       0.689
Acid_6178
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20671 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
 
  
 0.562
Acid_6177
PFAM: inner-membrane translocator; KEGG: oih:OB2573 ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.555
Acid_5151
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; iron dependent repressor; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
   
 0.529
Acid_7825
PFAM: inner-membrane translocator; KEGG: dge:Dgeo_2459 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.521
xylA
KEGG: bxe:Bxe_B2622 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
     
 0.456
Acid_6176
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV3018 D-ribose transport system ATP-binding protein.
 
  
 0.417
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.416
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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