Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3085KEGG: aba:Acid345_1711 hypothetical protein. (396 aa)    
Predicted Functional Partners:
Acid_3087
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_0423 hypothetical protein.
 
     0.703
Acid_6994
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.640
Acid_6153
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0423 hypothetical protein.
  
     0.617
Acid_7831
Hypothetical protein; KEGG: aba:Acid345_3909 TonB-dependent receptor.
  
     0.597
Acid_4916
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.589
Acid_0857
KEGG: nar:Saro_0604 hypothetical protein.
  
     0.582
Acid_4564
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.569
Acid_7376
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.568
Acid_5667
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.566
Acid_7647
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_3909 TonB-dependent receptor.
  
     0.550
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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