Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Acid_1024 | Acid_1280 | KEGG: aba:Acid345_4220 hypothetical protein. | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | 0.463 |
Acid_1024 | Acid_1509 | KEGG: aba:Acid345_4220 hypothetical protein. | KEGG: aba:Acid345_3322 hypothetical protein. | 0.768 |
Acid_1024 | Acid_1568 | KEGG: aba:Acid345_4220 hypothetical protein. | KEGG: aba:Acid345_2141 hypothetical protein. | 0.773 |
Acid_1024 | Acid_2218 | KEGG: aba:Acid345_4220 hypothetical protein. | KEGG: aba:Acid345_3561 hypothetical protein. | 0.772 |
Acid_1024 | Acid_2410 | KEGG: aba:Acid345_4220 hypothetical protein. | PFAM: Radical SAM domain protein; KEGG: aba:Acid345_0793 Fe-S protein, radical SAM family. | 0.764 |
Acid_1024 | Acid_3087 | KEGG: aba:Acid345_4220 hypothetical protein. | PFAM: TonB-dependent receptor; KEGG: aba:Acid345_0423 hypothetical protein. | 0.755 |
Acid_1024 | Acid_4474 | KEGG: aba:Acid345_4220 hypothetical protein. | TIGRFAM: TonB family protein; KEGG: aba:Acid345_0148 TonB-like protein. | 0.461 |
Acid_1024 | Acid_4832 | KEGG: aba:Acid345_4220 hypothetical protein. | PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A. | 0.767 |
Acid_1024 | Acid_6488 | KEGG: aba:Acid345_4220 hypothetical protein. | KEGG: aba:Acid345_1678 hypothetical protein. | 0.755 |
Acid_1280 | Acid_1024 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | KEGG: aba:Acid345_4220 hypothetical protein. | 0.463 |
Acid_1280 | Acid_1509 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | KEGG: aba:Acid345_3322 hypothetical protein. | 0.701 |
Acid_1280 | Acid_1568 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | KEGG: aba:Acid345_2141 hypothetical protein. | 0.544 |
Acid_1280 | Acid_2218 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | KEGG: aba:Acid345_3561 hypothetical protein. | 0.668 |
Acid_1280 | Acid_3087 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | PFAM: TonB-dependent receptor; KEGG: aba:Acid345_0423 hypothetical protein. | 0.773 |
Acid_1280 | Acid_4832 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A. | 0.620 |
Acid_1280 | Acid_6488 | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | KEGG: aba:Acid345_1678 hypothetical protein. | 0.667 |
Acid_1509 | Acid_1024 | KEGG: aba:Acid345_3322 hypothetical protein. | KEGG: aba:Acid345_4220 hypothetical protein. | 0.768 |
Acid_1509 | Acid_1280 | KEGG: aba:Acid345_3322 hypothetical protein. | TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein. | 0.701 |
Acid_1509 | Acid_1568 | KEGG: aba:Acid345_3322 hypothetical protein. | KEGG: aba:Acid345_2141 hypothetical protein. | 0.769 |
Acid_1509 | Acid_2218 | KEGG: aba:Acid345_3322 hypothetical protein. | KEGG: aba:Acid345_3561 hypothetical protein. | 0.775 |
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