Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3095Conserved hypothetical protein; KEGG: sma:SAV2116 glycosyl hydrolase. (308 aa)    
Predicted Functional Partners:
Acid_6142
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3635 probable secreted glycosyl hydrolase.
  
     0.722
Acid_2502
PFAM: protein of unknown function DUF1080; KEGG: sco:SCO7211 secreted glycosyl hydrolase.
  
     0.718
Acid_3094
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1052 serine/threonine protein kinase with TPR repeats.
       0.668
Acid_2081
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.662
Acid_2605
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.662
Acid_6139
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.659
Acid_2087
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.658
Acid_7226
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.654
Acid_3088
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.652
Acid_2979
PFAM: protein of unknown function DUF1080; KEGG: rba:RB9439 putative large multi-functional protein.
  
     0.622
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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