Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3124KEGG: gvi:gll3705 unknown protein. (217 aa)    
Predicted Functional Partners:
Acid_3125
PFAM: Redoxin domain protein; KEGG: pcu:pc1788 hypothetical protein.
 
     0.821
Acid_3126
Hypothetical protein; KEGG: aba:Acid345_0933 Cna B-type protein.
       0.762
Acid_3595
PFAM: DinB family protein; KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.704
Acid_5214
PFAM: DinB family protein; KEGG: aba:Acid345_2760 hypothetical protein.
  
     0.698
Acid_3127
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_1694 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.676
Acid_3829
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.660
Acid_6550
UTP--glucose-1-phosphate uridylyltransferase-like protein; KEGG: rba:RB9096 similar to UTP--glucose-1-phosphate uridylyltransferase.
  
     0.657
Acid_2664
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.633
Acid_6767
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: pfl:PFL_5668 quinate/shikimate dehydrogenase, putative.
  
     0.629
Acid_1948
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: xcb:XC_2659 glucose dehydrogenase.
  
     0.623
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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