Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3142PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: jan:Jann_3483 NADP oxidoreductase, coenzyme F420-dependent. (209 aa)    
Predicted Functional Partners:
Acid_3140
KEGG: ade:Adeh_2379 putative transmembrane transcriptional regulator (anti-sigma factor).
       0.578
Acid_3141
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ade:Adeh_2378 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
       0.578
Acid_3143
TIGRFAM: glycogen debranching enzyme, putative; PFAM: Amylo-alpha-1,6-glucosidase; KEGG: mbu:Mbur_0439 glycogen debranching enzyme.
       0.555
Acid_3139
KEGG: aba:Acid345_2770 amino acid aldolase or racemase-like.
       0.512
Acid_4282
PFAM: protein of unknown function DUF1486; KEGG: ppr:PBPRB0239 hypothetical protein.
 
     0.509
Acid_2463
Glucose/sorbosone dehydrogenase-like protein; KEGG: sth:STH2009 hypothetical protein.
  
     0.475
Acid_3144
Hypothetical protein.
       0.404
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
  
     0.404
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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