STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3188PFAM: PP-loop domain protein; KEGG: ade:Adeh_0903 ATPase; Belongs to the TtcA family. (260 aa)    
Predicted Functional Partners:
Acid_0108
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: gme:Gmet_2933 ThiS, thiamine-biosynthesis.
  
 
 0.827
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.689
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.663
Acid_3190
NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.634
Acid_3186
PFAM: phosphate transporter; KEGG: aba:Acid345_3131 phosphate transporter.
  
    0.583
Acid_3187
PFAM: protein of unknown function DUF47; KEGG: gme:Gmet_3132 protein of unknown function DUF47.
       0.578
Acid_4276
Methyltransferase type 11; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_0672 putative RNA methylase.
  
  
 0.526
Acid_3189
KEGG: ret:RHE_CH03422 hypothetical protein.
       0.517
Acid_7476
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eca:ECA4208 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.512
Acid_0230
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein.
   
  
 0.510
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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