Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3191PFAM: ribulose-phosphate 3-epimerase; KEGG: aba:Acid345_0074 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (224 aa)    
Predicted Functional Partners:
Acid_2453
PFAM: Transketolase domain protein; KEGG: dsy:DSY4868 hypothetical protein.
  
 0.997
Acid_0656
PFAM: Transketolase domain protein; KEGG: rpc:RPC_3879 transketolase-like.
  
 0.995
Acid_1936
PFAM: Transketolase domain protein; Transketolase, central region; KEGG: ava:Ava_1655 transketolase.
 
 0.974
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: cac:CAC2612 xylulose kinase.
 
  
 0.972
Acid_3864
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: gvi:glr2297 transketolase; Belongs to the transketolase family.
 
 0.967
Acid_2452
Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: gme:Gmet_0552 transketolase-like.
 
 
 0.963
Acid_0657
PFAM: Transketolase, central region; KEGG: pub:SAR11_0536 transketolase family.
 
 
 0.957
Acid_7082
6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.957
Acid_3190
NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
   0.930
Acid_0828
TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: aba:Acid345_2809 sugar-phosphate isomerases, RpiB/LacA/LacB family.
  
 
 0.927
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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