Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3196PFAM: protein of unknown function UPF0150; KEGG: ava:Ava_1938 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Acid_3197
PFAM: YcfA family protein; KEGG: rba:RB3259 hypothetical protein.
   
 0.842
Acid_3192
KEGG: aba:Acid345_0073 DNA uptake lipoprotein-like.
       0.732
Acid_3193
PFAM: response regulator receiver; KEGG: aba:Acid345_0072 response regulator receiver protein.
       0.732
Acid_3194
PFAM: protein of unknown function DUF520; KEGG: aba:Acid345_2028 protein of unknown function DUF520; Belongs to the UPF0234 family.
       0.732
Acid_3195
KEGG: aba:Acid345_1042 hypothetical protein.
       0.732
Acid_3190
NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.596
Acid_3191
PFAM: ribulose-phosphate 3-epimerase; KEGG: aba:Acid345_0074 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.596
Acid_3189
KEGG: ret:RHE_CH03422 hypothetical protein.
       0.556
tdk
PFAM: thymidine kinase; KEGG: bba:Bd3420 thymidine kinase.
       0.551
Acid_4330
KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator.
     
 0.446
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.