STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3200PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: aba:Acid345_3460 major facilitator superfamily (MFS) transporter. (393 aa)    
Predicted Functional Partners:
Acid_1848
PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_1507 macrolide efflux protein.
  
   
 0.761
Acid_4615
PFAM: major facilitator superfamily MFS_1; KEGG: aba:Acid345_2122 major facilitator superfamily (MFS) transporter.
  
   
 0.756
Acid_2815
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3157 export protein.
  
   
 0.701
Acid_3199
PFAM: Cna B domain protein; KEGG: aba:Acid345_4190 TonB-dependent receptor.
       0.642
Acid_3201
Sialate O-acetylesterase; PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: aba:Acid345_1697 sialate O-acetylesterase.
       0.601
Acid_5615
KEGG: mag:amb4304 molecular chaperone.
  
   
 0.479
Acid_0587
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: aba:Acid345_4052 AMP-dependent synthetase and ligase.
  
 0.437
Acid_0244
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: ccr:CC2411 3-oxoadipate enol-lactone hydrolase / 4-carboxymuconolactone decarboxylase.
  
  
 0.430
Acid_2912
PFAM: Carboxymuconolactone decarboxylase; Cupin domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
  
    0.415
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.