Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3209Hypothetical protein; KEGG: sru:SRU_2161 TonB-dependent receptor domain protein. (999 aa)    
Predicted Functional Partners:
Acid_1620
Hypothetical protein; KEGG: aba:Acid345_0417 TonB-dependent receptor.
  
     0.772
Acid_1533
PFAM: peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily.
  
     0.684
Acid_7026
KEGG: ccr:CC0925 OmpA-related protein.
  
    0.683
Acid_6511
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.680
Acid_3516
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.676
Acid_0005
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.623
Acid_7193
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.529
Acid_5022
PFAM: peptidase M28; KEGG: ccr:CC2840 hypothetical protein.
  
     0.506
Acid_5302
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: cps:CPS_1104 dipeptidyl peptidase IV.
  
     0.489
Acid_4474
TIGRFAM: TonB family protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
   0.487
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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