Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3239PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_1826 amidohydrolase. (427 aa)    
Predicted Functional Partners:
Acid_3398
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_3066 amidohydrolase.
  
     0.775
Acid_1120
PFAM: amidohydrolase; KEGG: gvi:gll3395 similar to Xaa-Pro dipeptidase.
  
     0.733
hutH
KEGG: aba:Acid345_1410 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
  
 0.674
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.671
Acid_3240
PFAM: phosphatidate cytidylyltransferase; KEGG: aba:Acid345_1418 phosphatidate cytidylyltransferase; Belongs to the CDS family.
       0.548
Acid_3241
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.548
Acid_6720
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rba:RB977 probable N-acetylglucosamine-6-phosphate deacetylase.
  
     0.496
Acid_3238
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bja:blr7625 probable mandelate racemase.
       0.458
Acid_1954
Amidohydrolase; PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: ade:Adeh_2230 hypothetical protein.
  
     0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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