STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3247KEGG: bcl:ABC1198 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Acid_5256
KEGG: bsu:BG12896 hypothetical protein.
  
     0.688
Acid_4157
KEGG: ccr:CC0122 hypothetical protein.
  
     0.683
Acid_3248
PFAM: response regulator receiver; KEGG: aba:Acid345_3014 multi-sensor hybrid histidine kinase.
       0.634
Acid_2176
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.632
Acid_1844
KEGG: bat:BAS2535 hypothetical protein.
  
     0.583
Acid_3245
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1949 sugar phosphate isomerase/epimerase.
       0.543
Acid_3246
PFAM: oxidoreductase domain protein; KEGG: rba:RB2833 conserved hypothetical protein, putative NADH-dependent dyhydrogenase.
       0.543
Acid_3250
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE1574 cystathionine gamma-synthase.
       0.515
Acid_3431
PFAM: protein of unknown function UPF0153; KEGG: lla:L29314 unknown protein.
  
     0.512
cysS
KEGG: aba:Acid345_3992 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.490
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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