Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3261RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma factor, ECF family protein; Sigma-70, region 4 type 2; KEGG: gvi:gll4071 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Acid_3262
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: gvi:glr1096 serine/threonine protein kinase.
 
 
   0.884
Acid_1208
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.760
Acid_3263
KEGG: fra:Francci3_2176 hypothetical protein.
       0.737
Acid_1628
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.722
Acid_3444
PFAM: protein kinase; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.722
Acid_1128
PFAM: protein kinase; TPR repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.717
Acid_6380
PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.715
Acid_7624
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.705
Acid_3841
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_4049 serine/threonine protein kinase with TPR repeats.
  
 
   0.702
Acid_1368
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: gvi:glr1096 serine/threonine protein kinase.
  
 
   0.641
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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