Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acid_3263KEGG: fra:Francci3_2176 hypothetical protein. (267 aa)    
Predicted Functional Partners:
Acid_3261
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma factor, ECF family protein; Sigma-70, region 4 type 2; KEGG: gvi:gll4071 hypothetical protein.
       0.737
Acid_3262
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: gvi:glr1096 serine/threonine protein kinase.
       0.737
Acid_3264
Hypothetical protein.
       0.618
Acid_3260
KEGG: rsp:RSP_3937 probable transposase protein, Y4bF.
       0.493
Acid_3265
PFAM: regulatory protein, TetR; KEGG: aba:Acid345_0696 transcriptional regulator, TetR family.
       0.446
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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