STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3265PFAM: regulatory protein, TetR; KEGG: aba:Acid345_0696 transcriptional regulator, TetR family. (194 aa)    
Predicted Functional Partners:
Acid_3267
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mlr6936 sarcosine-dimethylglycine methyltransferase.
 
 
   0.584
Acid_3264
Hypothetical protein.
       0.547
Acid_3266
KEGG: aba:Acid345_0697 hypothetical protein.
       0.529
Acid_4480
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: aba:Acid345_2267 transcriptional regulator, AraC family.
  
   
 0.487
Acid_3551
PFAM: regulatory protein, TetR; KEGG: eli:ELI_11015 transcriptional regulator, TetR family protein.
  
     0.480
Acid_2601
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: aba:Acid345_2172 transcriptional regulator, GntR family.
  
   
 0.452
Acid_4803
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ana:alr4738 transcriptional regulator.
  
   
 0.451
Acid_3263
KEGG: fra:Francci3_2176 hypothetical protein.
       0.446
Acid_6071
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: plu:plu0949 hypothetical protein.
  
     0.444
Acid_5197
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family.
  
   
 0.436
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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