Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_3271PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat. (272 aa)    
Predicted Functional Partners:
Acid_1602
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mca:MCA0908 ATPase, AAA family.
   
 0.782
Acid_3272
KEGG: aba:Acid345_3580 hypothetical protein.
       0.773
Acid_0338
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bba:Bd3406 flagellar basal-body rod protein.
   
 
 0.762
Acid_0301
PFAM: histone deacetylase superfamily; KEGG: sme:SMc00969 hypothetical protein.
    
  0.684
Acid_1085
PFAM: histone deacetylase superfamily; KEGG: aba:Acid345_3902 histone deacetylase superfamily.
    
  0.684
Acid_1912
PFAM: histone deacetylase superfamily; KEGG: aba:Acid345_2789 histone deacetylase superfamily.
    
  0.684
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
  0.639
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
  0.623
rpsI
PFAM: ribosomal protein S9; KEGG: aba:Acid345_0562 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
     
  0.617
rpsB
PFAM: ribosomal protein S2; KEGG: aba:Acid345_0563 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
     
  0.579
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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