Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3301PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll4600 4-carboxymuconolactone decarboxylase, putative. (230 aa)    
Predicted Functional Partners:
Acid_0245
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: reu:Reut_B5023 delta crystallin.
 
 
 0.950
Acid_0244
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: ccr:CC2411 3-oxoadipate enol-lactone hydrolase / 4-carboxymuconolactone decarboxylase.
 
  
 0.927
Acid_2912
PFAM: Carboxymuconolactone decarboxylase; Cupin domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
 
  
0.926
Acid_3303
KEGG: sme:SMa0561 hypothetical protein.
 
     0.828
Acid_1477
PFAM: ThiJ/PfpI domain protein; KEGG: aba:Acid345_0093 ThiJ/PfpI.
 
    0.729
Acid_3302
PFAM: 4-oxalocrotonate tautomerase; KEGG: aba:Acid345_2511 4-oxalocrotonate tautomerase.
 
   
 0.713
Acid_3304
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr6532 putative dehydrogenase.
 
    0.596
Acid_2914
PFAM: dienelactone hydrolase; KEGG: ade:Adeh_3213 hypothetical protein.
 
    0.586
Acid_0252
KEGG: rxy:Rxyl_1564 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
   
 0.567
Acid_3305
PFAM: aldo/keto reductase; KEGG: rpc:RPC_4894 aldo/keto reductase.
       0.516
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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