STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3354PFAM: protein of unknown function DUF111; KEGG: aba:Acid345_2031 protein of unknown function DUF111; Belongs to the LarC family. (370 aa)    
Predicted Functional Partners:
Acid_3974
PFAM: ExsB family protein; KEGG: aba:Acid345_0159 hypothetical protein.
  
 0.986
Acid_7127
KEGG: aba:Acid345_1347 hypothetical protein.
 
  
 0.939
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.804
Acid_3352
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: aba:Acid345_2029 TatD-related deoxyribonuclease.
       0.791
Acid_3351
Geranyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: aba:Acid345_2027 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.757
Acid_6714
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: ava:Ava_1755 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
    0.733
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.656
Acid_1417
PFAM: protein of unknown function DUF362; KEGG: mma:MM0611 iron-sulfur cluster-binding protein.
 
     0.652
Acid_1937
PFAM: protein of unknown function DUF362; KEGG: mba:Mbar_A1540 hypothetical protein.
 
     0.632
Acid_5618
PFAM: LOR/SDH bifunctional enzyme conserved domain protein; KEGG: tel:tll0507 hypothetical protein.
 
     0.538
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.