Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3397PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_0526 short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)    
Predicted Functional Partners:
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 
 0.901
Acid_6073
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2476 dehydrogenase/reductase (secreted protein).
  
 
  0.794
Acid_4762
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: xac:XAC1484 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.791
Acid_4264
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: atc:AGR_pAT_564 short chain dehydrogenase.
  
 
  0.789
Acid_6587
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_3738 short-chain dehydrogenase/reductase SDR.
  
 
  0.789
Acid_3396
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: atc:AGR_C_3663 hypothetical protein.
 
     0.787
Acid_4479
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bxe:Bxe_B1096 glucose dehydrogenase.
  
 
  0.784
Acid_3962
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: csa:Csal_1758 short-chain dehydrogenase/reductase SDR.
  
 
  0.767
Acid_1849
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tte:TTE0051 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.747
Acid_4969
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_4309 short-chain dehydrogenase/reductase SDR.
  
 
  0.738
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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