Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3452Fervidolysin. Serine peptidase. MEROPS family S08A; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: dra:DRA0341 serine protease, subtilase family. (455 aa)    
Predicted Functional Partners:
Acid_3453
Hypothetical protein.
       0.705
Acid_2780
PFAM: cytochrome P450; KEGG: bsu:BG11528 cytochrome p450-like enzyme.
   
 0.668
Acid_6622
KEGG: gvi:gll1942 cytochrome P-450 like protein; Belongs to the cytochrome P450 family.
   
 0.668
Acid_0172
KEGG: rba:RB4201 hypothetical protein.
     
 0.636
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.636
Acid_7045
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 0.626
Acid_6185
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
 0.588
Acid_3455
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.480
Acid_3456
PFAM: extracellular solute-binding protein, family 5; KEGG: aae:aq_1441 peptide transport system substrate-binding protein.
  
  
 0.428
Acid_4222
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.421
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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