STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3456PFAM: extracellular solute-binding protein, family 5; KEGG: aae:aq_1441 peptide transport system substrate-binding protein. (579 aa)    
Predicted Functional Partners:
Acid_3458
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_481 peptide transport system permease protein.
 0.997
Acid_3457
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_1509 putative oligopeptide transport system permease protein.
 
 0.995
Acid_3460
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2175 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like.
 
 0.987
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
 
 0.985
Acid_7875
PFAM: extracellular solute-binding protein, family 5; KEGG: aba:Acid345_1732 ABC peptide transporter, periplasmic ligand binding protein.
  
  
  0.913
Acid_6996
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0730 pyruvate--ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.845
Acid_3454
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
       0.773
Acid_3455
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
Acid_1870
2-oxoisovalerate ferredoxin oxidoreductase beta subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aba:Acid345_0953 thiamine pyrophosphate enzyme-like TPP-binding.
  
  
 0.700
Acid_7693
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0598 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
  
    0.693
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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