Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3473PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dsy:DSY4708 hypothetical protein. (438 aa)    
Predicted Functional Partners:
Acid_3472
PFAM: Methyltransferase type 11; KEGG: mag:amb1824 hypothetical protein.
       0.571
Acid_6964
KEGG: rba:RB5300 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.535
Acid_3072
KEGG: rba:RB4621 hypothetical protein-signal peptide prediction.
 
     0.526
Acid_5845
PFAM: S1/P1 nuclease; KEGG: gox:GOX2101 nuclease S1.
 
     0.511
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.509
Acid_5332
KEGG: rba:RB6629 hypothetical protein.
  
     0.492
Acid_5331
KEGG: rba:RB6629 hypothetical protein.
  
     0.488
Acid_5711
Hypothetical protein; KEGG: rba:RB5247 putative WD-repeat containing protein.
  
 
  0.486
Acid_1455
PFAM: peptidase M20; protease-associated PA domain protein; peptidase M28; SMART: PDZ/DHR/GLGF domain protein; KEGG: aba:Acid345_3483 peptidase M28.
  
    0.464
Acid_1130
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_1415 TonB-dependent receptor.
  
     0.429
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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