STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3512PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ade:Adeh_1174 4Fe-4S ferredoxin, iron-sulfur binding protein. (422 aa)    
Predicted Functional Partners:
Acid_3511
KEGG: ade:Adeh_1176 hypothetical protein.
 
   
 0.947
Acid_3507
PFAM: cytochrome c oxidase, subunit I; KEGG: pcu:pc1978 putative cytochrome-c oxidase fixN chain.
 
  
 0.934
Acid_3508
PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rfr:Rfer_1931 cytochrome c oxidase, cbb3-type, subunit II.
 
  
 0.925
Acid_3510
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2406 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.872
Acid_3506
Monoheme cytochrome SoxX (sulfur oxidation); KEGG: gme:Gmet_2122 cytochrome c, class I.
 
  
 0.865
Acid_3509
Hypothetical protein.
       0.773
Acid_0490
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_3003 Fe-S-cluster-containing hydrogenase.
  
  
 0.713
Acid_3513
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_1177 copper-translocating P-type ATPase.
 
  
 0.656
Acid_6208
PFAM: cytochrome c, class I; Cytochrome b/b6, N-terminal domain; KEGG: gsu:GSU1649 cytochrome b/b6.
  
  
 0.629
Acid_3505
PFAM: Cytochrome b/b6, N-terminal domain; KEGG: ade:Adeh_2404 cytochrome b/b6-like.
  
  
 0.540
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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