Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3522KEGG: aba:Acid345_4399 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Acid_3520
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4397 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.792
Acid_3521
Hypothetical protein.
       0.773
Acid_3519
PFAM: globin; Ankyrin; KEGG: sco:SCO2671 putative globin.
       0.501
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
       0.491
Acid_3524
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA0189 putative mandelate racemase / muconate lactonizing enzyme.
       0.491
Acid_3525
KEGG: aba:Acid345_4127 hypothetical protein.
       0.491
Acid_3526
PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_4394 transcriptional regulator, PadR-like family.
       0.434
Acid_3527
PFAM: protein of unknown function DUF214; KEGG: gvi:glr1418 putative ABC transport system permease protein.
       0.434
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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