STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3524PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA0189 putative mandelate racemase / muconate lactonizing enzyme. (446 aa)    
Predicted Functional Partners:
Acid_5529
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
  0.934
Acid_3346
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
  0.923
Acid_5062
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
  0.923
Acid_1453
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3967 altronate dehydratase.
 
 
 0.917
Acid_2223
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sde:Sde_2646 phosphatidylserine decarboxylase.
     
  0.900
Acid_4969
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_4309 short-chain dehydrogenase/reductase SDR.
     
  0.900
Acid_3439
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: hma:rrnAC0575 mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.856
Acid_0828
TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: aba:Acid345_2809 sugar-phosphate isomerases, RpiB/LacA/LacB family.
     
  0.800
Acid_1206
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: bxe:Bxe_B1341 6-phosphogluconate dehydrogenase related protein.
     
  0.800
Acid_2122
PFAM: PfkB domain protein; KEGG: mta:Moth_0419 PfkB.
    
  0.800
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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