Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_3532PFAM: peptidase M14, carboxypeptidase A; KEGG: gvi:gll2474 hypothetical protein. (615 aa)    
Predicted Functional Partners:
Acid_5302
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: cps:CPS_1104 dipeptidyl peptidase IV.
 
     0.725
Acid_5307
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sru:SRU_1173 2-oxoglutarate dehydrogenase, E1 component.
    
  0.654
Acid_3530
KEGG: aba:Acid345_2533 hypothetical protein.
 
     0.629
Acid_3516
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.577
Acid_6511
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.577
Acid_2647
KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
  
     0.566
Acid_3533
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
       0.560
Acid_3204
Hypothetical protein; KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
  
     0.542
Acid_3447
KEGG: aba:Acid345_0515 hypothetical protein.
  
     0.541
Acid_1967
KEGG: gvi:glr0823 unknown protein.
  
     0.535
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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