Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3533KEGG: rba:RB6799 hypothetical protein-transmembrane prediction. (328 aa)    
Predicted Functional Partners:
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
    
 
 0.800
Acid_6537
KEGG: rba:RB11994 conserved hypothetical protein, putative secreted protein.
  
     0.772
Acid_7682
PFAM: FG-GAP repeat protein; KEGG: rba:RB5763 hypothetical protein-signal peptide prediction.
  
     0.748
Acid_3745
PFAM: protein of unknown function DUF1501; KEGG: rba:RB3808 hypothetical protein.
  
     0.746
Acid_3744
PFAM: protein of unknown function DUF1549; KEGG: rba:RB3804 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.733
Acid_1933
Hypothetical protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.731
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.729
Acid_1949
PFAM: FG-GAP repeat protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.716
Acid_6766
PFAM: FG-GAP repeat protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.715
Acid_5709
PFAM: Ig domain protein, group 2 domain protein; protein of unknown function DUF1549; KEGG: rba:RB5253 similar to S-layer related protein.
  
     0.706
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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