Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3548PFAM: Radical SAM domain protein; KEGG: aba:Acid345_1015 Fe-S protein, radical SAM family. (371 aa)    
Predicted Functional Partners:
Acid_3549
KEGG: aba:Acid345_1014 hypothetical protein.
      0.976
Acid_1260
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: aba:Acid345_1740 squalene cyclase.
   
 0.875
Acid_1186
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: aba:Acid345_1740 squalene cyclase.
   
 0.853
Acid_1261
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: aba:Acid345_1741 NAD-dependent epimerase/dehydratase.
 
     0.791
Acid_3836
PFAM: glycosyl transferase, family 2; KEGG: bur:Bcep18194_B0107 glycosyl transferase, family 2.
 
   
 0.779
Acid_6450
PFAM: glycosyl transferase, family 2; KEGG: aba:Acid345_0723 ceramide glucosyltransferase, putative.
 
   
 0.739
Acid_7504
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_2319 Fe-S protein, radical SAM family.
 
  
 0.738
Acid_1262
PFAM: purine and other phosphorylases, family 1; KEGG: mag:amb1368 nucleoside phosphorylase.
 
   
 0.736
Acid_1491
KEGG: aba:Acid345_0724 ceramide glucosyltransferase, putative.
 
   
 0.723
Acid_3564
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aba:Acid345_1747 carotene 7,8-desaturase.
 
    0.682
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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