Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3552PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28. (524 aa)    
Predicted Functional Partners:
Acid_5022
PFAM: peptidase M28; KEGG: ccr:CC2840 hypothetical protein.
  
     0.692
Acid_6315
PFAM: peptidase M28; KEGG: aba:Acid345_3483 peptidase M28.
  
     0.665
Acid_7193
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.640
Acid_6111
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_3483 peptidase M28.
  
     0.626
Acid_3516
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.619
Acid_6511
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.613
Acid_3553
KEGG: aba:Acid345_2503 hypothetical protein.
       0.574
Acid_1640
PFAM: peptidase M14, carboxypeptidase A; KEGG: ccr:CC0985 hypothetical protein.
  
     0.552
Acid_5004
KEGG: gvi:gll0760 hypothetical protein.
  
     0.538
Acid_3550
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sth:STH1915 hypothetical protein.
       0.525
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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