STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3553KEGG: aba:Acid345_2503 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Acid_2693
KEGG: bxe:Bxe_B1169 hypothetical protein.
   
 
 0.722
Acid_4407
KEGG: aba:Acid345_1118 hypothetical protein.
   
 
 0.722
Acid_4889
KEGG: pac:PPA2220 conserved protein (PRC-barrel domain).
   
 
 0.722
Acid_5774
KEGG: aba:Acid345_1118 hypothetical protein.
   
 
 0.722
Acid_7531
KEGG: ade:Adeh_3189 hypothetical protein.
   
 
 0.722
Acid_7532
KEGG: bxe:Bxe_B0005 hypothetical protein.
   
 
 0.722
Acid_2133
PFAM: membrane-flanked domain; KEGG: hma:rrnAC0955 hypothetical protein.
   
    0.585
Acid_3552
PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28.
       0.574
Acid_5050
KEGG: aba:Acid345_2503 hypothetical protein.
  
  
 
0.469
Acid_3436
KEGG: rpb:RPB_1874 hypothetical protein.
  
     0.433
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.