STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3560PFAM: metallophosphoesterase; KEGG: aba:Acid345_3007 metallophosphoesterase. (355 aa)    
Predicted Functional Partners:
Acid_3559
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
  
    0.587
Acid_3558
PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_1891 transcriptional regulator, PadR-like family.
       0.580
Acid_3556
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tte:TTE0766 hypothetical protein.
       0.432
Acid_3554
PFAM: PfkB domain protein; KEGG: tte:TTE0768 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase.
       0.423
Acid_3555
KEGG: tte:TTE0767 hypothetical protein.
       0.423
Acid_3557
KEGG: psp:PSPPH_4348 hypothetical protein.
       0.423
Acid_2075
KEGG: rba:RB7871 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.