Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Acid_3563PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bxe:Bxe_B1315 DNA ligase (ATP). (525 aa)    
Predicted Functional Partners:
Acid_3562
KEGG: pfo:Pfl_1212 hypothetical protein.
 
 0.998
Acid_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.844
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.817
Acid_3907
PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: dvu:DVU2085 SNF2 family protein.
    
 0.720
Acid_7542
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: aba:Acid345_2893 DEAD/DEAH box helicase-like.
   
 0.691
Acid_7192
PFAM: nuclear protein SET; SMART: SET-related domain protein; KEGG: cel:C26E6.9b Set (trithorax/polycomb) domain containing protein 2, isoform b.
    
  0.653
Acid_7729
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aba:Acid345_1280 amine oxidase.
   
 
  0.642
Acid_0439
KEGG: nha:Nham_3998 putative DNA topoisomerase I.
 
 
 0.577
Acid_6730
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:bll4069 exodeoxyribonuclease III.
 
 
 0.576
Acid_3561
Hypothetical protein.
       0.562
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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