STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3564PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aba:Acid345_1747 carotene 7,8-desaturase. (433 aa)    
Predicted Functional Partners:
Acid_1266
Farnesyl-diphosphate farnesyltransferase; PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1746 squalene/phytoene synthase.
   
 0.961
Acid_1265
PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1745 squalene/phytoene synthase.
   
 0.823
Acid_3548
PFAM: Radical SAM domain protein; KEGG: aba:Acid345_1015 Fe-S protein, radical SAM family.
 
    0.674
Acid_1260
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: aba:Acid345_1740 squalene cyclase.
 
   
 0.662
Acid_1186
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: aba:Acid345_1740 squalene cyclase.
 
   
 0.660
Acid_3836
PFAM: glycosyl transferase, family 2; KEGG: bur:Bcep18194_B0107 glycosyl transferase, family 2.
 
     0.572
Acid_1261
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: aba:Acid345_1741 NAD-dependent epimerase/dehydratase.
 
     0.502
Acid_2934
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aba:Acid345_0547 hemerythrin HHE cation binding protein.
  
     0.465
Acid_3565
KEGG: aba:Acid345_0395 hypothetical protein.
       0.456
Acid_4909
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB1210 probable hexulose-6-phosphate isomerase.
  
     0.442
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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