Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Acid_3565KEGG: aba:Acid345_0395 hypothetical protein. (1197 aa)    
Predicted Functional Partners:
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.774
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.771
Acid_5910
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.756
Acid_6488
KEGG: aba:Acid345_1678 hypothetical protein.
  
     0.756
Acid_1024
KEGG: aba:Acid345_4220 hypothetical protein.
  
     0.747
Acid_7266
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3344 von Willebrand factor, type A.
  
     0.742
Acid_4832
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
  
     0.732
Acid_6470
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
     0.731
Acid_3383
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.728
Acid_3420
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
  
     0.727
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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