Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3571KEGG: aba:Acid345_4177 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Acid_3570
PFAM: GtrA family protein; KEGG: aba:Acid345_4178 GtrA-like protein.
 
     0.854
Acid_4971
KEGG: hch:HCH_00492 hypothetical protein.
  
     0.472
Acid_3572
KEGG: ddi:DDB0216709 hypothetical protein.
       0.471
Acid_6158
KEGG: aba:Acid345_0445 hypothetical protein.
  
     0.450
Acid_3462
PFAM: Tetratricopeptide TPR_2 repeat protein.
  
     0.437
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
     0.435
Acid_1773
PFAM: Cna B domain protein; KEGG: aba:Acid345_0900 hypothetical protein.
  
     0.413
Acid_1990
KEGG: aba:Acid345_0918 Cna B-type protein.
  
     0.410
Acid_6169
PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: aba:Acid345_0887 NusG antitermination factor.
  
     0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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