Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3591PFAM: cyclase family protein; KEGG: sde:Sde_2775 cyclase. (253 aa)    
Predicted Functional Partners:
Acid_2875
Kynureninase; PFAM: aminotransferase, class V; KEGG: rme:Rmet_5192 kynureninase.
  
  
 0.880
Acid_6002
PFAM: Cupin 2, conserved barrel domain protein.
  
    0.803
Acid_3590
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0395 hypothetical protein.
       0.773
Acid_3587
PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi00525 YdaF.
       0.543
Acid_3588
PFAM: conserved hypothetical protein 730; KEGG: aba:Acid345_4407 conserved hypothetical protein 730; Belongs to the LOG family.
       0.543
lpxD-2
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
       0.543
Acid_3592
PFAM: OsmC family protein; KEGG: nha:Nham_0225 OsmC-like protein.
 
     0.490
Acid_6581
KEGG: pfu:PF0973 acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.421
Acid_0987
Anthranilate synthase, component II / anthranilate synthase, component I; TIGRFAM: glutamine amidotransferase of anthranilate synthase; anthranilate synthase; PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: ava:Ava_4890 glutamine amidotransferase of anthranilate synthase.
     
 0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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