STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3594Hypothetical protein; KEGG: aba:Acid345_0783 TonB-dependent receptor. (1134 aa)    
Predicted Functional Partners:
Acid_6488
KEGG: aba:Acid345_1678 hypothetical protein.
  
    0.784
Acid_1620
Hypothetical protein; KEGG: aba:Acid345_0417 TonB-dependent receptor.
  
     0.773
Acid_7026
KEGG: ccr:CC0925 OmpA-related protein.
  
     0.772
Acid_3593
PFAM: protein kinase; WD40 domain protein beta Propeller; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_2219 serine/threonine protein kinase.
       0.642
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.637
Acid_6511
Peptidase M28; PFAM: protease-associated PA domain protein; peptidase M28; KEGG: aba:Acid345_0806 peptidase M28.
  
     0.634
Acid_1533
PFAM: peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily.
  
     0.581
Acid_3516
PFAM: peptidase M20; peptidase M28; KEGG: gvi:gll4423 hypothetical protein.
  
     0.581
Acid_5022
PFAM: peptidase M28; KEGG: ccr:CC2840 hypothetical protein.
  
     0.575
Acid_1121
KEGG: aba:Acid345_4732 hypothetical protein.
  
     0.552
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.