Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3607PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_4626 transcriptional regulator, PadR-like family. (111 aa)    
Predicted Functional Partners:
Acid_3606
PFAM: protein of unknown function DUF214; KEGG: gvi:glr1418 putative ABC transport system permease protein.
       0.773
Acid_3608
PFAM: AMP-dependent synthetase and ligase; KEGG: gsu:GSU1103 long-chain-fatty-acid--CoA ligase, putative.
       0.444
Acid_3609
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; KEGG: aba:Acid345_4715 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like.
       0.403
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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