STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3619PFAM: DSBA oxidoreductase; KEGG: mxa:MXAN_3206 DsbA-like thioredoxin domain protein. (293 aa)    
Predicted Functional Partners:
Acid_6757
Redoxin domain protein; PFAM: cytochrome c biogenesis protein, transmembrane region; Redoxin domain protein; KEGG: bfr:BF3193 thiol:disulfide interchange protein DsbD precursor.
  
 
 0.798
Acid_4524
KEGG: tfu:Tfu_1523 similar to protein-disulfide isomerase.
  
     0.762
Acid_2697
PFAM: DSBA oxidoreductase; KEGG: sme:SMc00023 hypothetical protein.
  
     0.756
Acid_1637
KEGG: jan:Jann_3567 hypothetical protein.
 
      0.718
Acid_3618
PFAM: protein of unknown function DUF1328; KEGG: pae:PA5482 hypothetical protein.
       0.596
Acid_3617
KEGG: mhu:Mhun_0761 hypothetical protein.
       0.421
Acid_5380
KEGG: aba:Acid345_0182 hypothetical protein.
  
 
 0.405
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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