STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3629PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll0508 hypothetical oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (242 aa)    
Predicted Functional Partners:
Acid_3882
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rba:RB8728 putative oxidoreductase.
  
    0.773
Acid_2240
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aba:Acid345_2846 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.727
Acid_1739
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: hch:HCH_00808 short-chain alcohol dehydrogenase-like protein.
  
    0.720
Acid_3630
PFAM: protein of unknown function DUF1555; KEGG: rfr:Rfer_0647 hypothetical protein.
       0.558
Acid_3631
PFAM: beta-lactamase; Uncharacterised conserved protein UCP016719; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
       0.410
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.