STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3644Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bsu:BG11900 alpha-L-arabinofuranosidase 1 (arabinosidase). (508 aa)    
Predicted Functional Partners:
uxaC
PFAM: Glucuronate isomerase; KEGG: bth:BT0823 uronate isomerase.
     
 0.817
Acid_6718
PFAM: GHMP kinase; KEGG: dre:569254 hypothetical protein LOC569254.
     
  0.800
Acid_7301
PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: aba:Acid345_0579 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
     
  0.800
Acid_7770
PFAM: glycoside hydrolase, family 28; KEGG: rso:RSp0880 polygalacturonase precursor (pectinase) signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
Acid_3645
PFAM: dihydrodipicolinate synthetase; KEGG: rsp:RSP_3456 putative dihydrodipicolinate synthase; Belongs to the DapA family.
       0.773
Acid_7231
PFAM: protein of unknown function DUF1680; KEGG: bth:BT3674 hypothetical protein.
 
     0.761
Acid_6784
PFAM: protein of unknown function DUF1680; KEGG: bth:BT3674 hypothetical protein.
 
     0.760
Acid_3381
PFAM: protein of unknown function DUF1680; KEGG: bth:BT3674 hypothetical protein.
 
     0.754
Acid_4441
PFAM: glycoside hydrolase, family 43; KEGG: sco:SCO2427 secreted arabinase.
 
  
 0.691
Acid_1242
PFAM: protein of unknown function DUF1680; KEGG: sma:SAV1144 secreted protein.
 
     0.656
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.