STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3666KEGG: ade:Adeh_1237 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Acid_1744
PFAM: Cna B domain protein; KEGG: aba:Acid345_0918 Cna B-type protein.
  
     0.697
Acid_1591
Hypothetical protein; KEGG: aba:Acid345_0933 Cna B-type protein.
  
    0.684
Acid_3368
Hypothetical protein; KEGG: aba:Acid345_1501 TonB-dependent receptor.
  
    0.663
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.662
Acid_7234
KEGG: dde:Dde_0840 hypothetical protein.
  
     0.654
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
  
    0.648
Acid_6433
TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: ade:Adeh_4265 conserved hypothetical protein, double-transmembrane region.
  
     0.626
Acid_4461
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_0933 Cna B-type protein.
  
    0.620
Acid_3977
KEGG: aba:Acid345_0428 hypothetical protein.
  
    0.619
Acid_6153
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0423 hypothetical protein.
  
    0.616
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.