Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_3702PFAM: DGPFAETKE family protein; KEGG: nfa:nfa13230 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Acid_3701
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa13220 putative sigma factor.
 
    0.930
Acid_0029
KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like.
  
     0.639
Acid_5764
KEGG: bja:bsl6676 hypothetical protein.
  
     0.557
Acid_7385
KEGG: zmo:ZMO0445 hypothetical protein.
  
     0.557
Acid_6255
PFAM: bifunctional deaminase-reductase domain protein; KEGG: sco:SCO2813 hypothetical protein.
 
     0.540
Acid_5300
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4453 putative sigma factor, ECF subfamily.
 
    0.529
Acid_2430
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4314 putative sigma factor, ECF subfamily.
 
    0.500
Acid_2001
KEGG: eli:ELI_08855 phosphoribosylglycinamide formyltransferase protein.
  
     0.485
Acid_0083
KEGG: ttj:TTHA1450 hypothetical protein.
  
     0.468
Acid_5607
KEGG: deh:cbdb_A1264 acetyltransferase, GNAT family.
  
     0.461
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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