STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3741KEGG: mca:MCA0469 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Acid_2677
KEGG: rba:RB7682 hypothetical protein.
  
     0.529
Acid_3742
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein; KEGG: aor:AO090012000058 predicted protein Pfam: Glyco_hydro_2_N Bac_rhamnosid_N Bac_rhamnosid.
       0.501
Acid_3743
Endothelin-converting enzyme 1; PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: aba:Acid345_1491 endothelin-converting enzyme 1.
       0.501
Acid_6336
Hypothetical protein.
  
     0.471
Acid_3074
Hypothetical protein.
  
     0.462
Acid_5942
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sgaU; putative L-xylulose-5-phosphate 3-epimerase.
  
     0.460
Acid_6506
KEGG: ade:Adeh_1237 hypothetical protein.
  
     0.422
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.413
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.