Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3753PFAM: protein of unknown function DUF323; KEGG: bxe:Bxe_B0605 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Acid_3752
KEGG: bxe:Bxe_B0024 hypothetical protein.
  
 0.996
Acid_3754
Hypothetical protein.
       0.686
Acid_7803
KEGG: mba:Mbar_A1694 hypothetical protein.
 
  
 0.669
Acid_3749
Hypothetical protein.
       0.503
Acid_3750
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB1866 probable transport ATP-binding protein.
       0.503
Acid_3751
PFAM: regulatory protein GntR, HTH; KEGG: mta:Moth_1165 transcriptional regulator, GntR family.
       0.503
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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