Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_3786PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_1285 ABC efflux pump, inner membrane subunit. (831 aa)    
Predicted Functional Partners:
Acid_6482
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0366 secretion protein HlyD.
  
    0.806
Acid_7796
PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_1695 putative permease.
  
     0.760
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
  
   0.756
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
  
     0.730
Acid_6478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0372 ABC transporter, ATPase subunit.
  
   0.703
Acid_3595
PFAM: DinB family protein; KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.583
Acid_3787
Hypothetical protein.
       0.566
Acid_3788
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins.
       0.566
Acid_3789
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sth:STH292 hypothetical protein.
       0.566
Acid_0448
KEGG: aba:Acid345_3332 hypothetical protein.
  
     0.552
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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