STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3847PFAM: protein of unknown function DUF218; KEGG: wsu:WS1867 hypothetical protein. (204 aa)    
Predicted Functional Partners:
Acid_3848
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_1514 ABC transporter, ATPase subunit.
       0.777
Acid_3846
Hypothetical protein.
       0.775
Acid_3845
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sat:SYN_01716 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.628
Acid_3844
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: aba:Acid345_1701 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
       0.599
Acid_2246
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase.
 
     0.457
Acid_3642
Hypothetical protein; KEGG: aba:Acid345_4154 TonB-dependent receptor.
 
     0.406
Acid_5383
Hypothetical protein; KEGG: aba:Acid345_1549 TonB-dependent receptor.
  
     0.405
Acid_4418
PFAM: Cna B domain protein; KEGG: aba:Acid345_0933 Cna B-type protein.
  
     0.404
Acid_3843
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: nfa:nfa45040 putative transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.403
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.