STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3877PFAM: Integrase, catalytic region; Resolvase helix-turn-helix domain protein; KEGG: pen:PSEEN4950 transposase. (395 aa)    
Predicted Functional Partners:
Acid_3876
PFAM: NIPSNAP family containing protein; KEGG: ret:RHE_CH01051 hypothetical protein.
       0.509
Acid_3874
PFAM: protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein.
       0.440
Acid_3875
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ttj:TTHA1557 propionyl-CoA carboxylase, beta subunit.
       0.440
Acid_2473
KEGG: noc:Noc_1096 hypothetical protein.
  
    0.403
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.